Yoko Yamaguchi

2021

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

FANTOM consortium, 1 12月 2021, In: Nature Communications. 12, 1, 3297.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Open Access

13 被引用数 (Scopus)

Local administration of anti-hepatocyte growth factor-neutralizing antibody reverts naturally occurring periodontitis

Yamaguchi, Y. & Ohshima, M., 9月 2021, In: Journal of Oral Biosciences. 63, 3, p. 245-252 8 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

2 被引用数 (Scopus)

Targeting hepatocyte growth factor in epithelial–stromal interactions in an in vitro experimental model of human periodontitis

Yamaguchi, Y., Saito, A., Horie, M., Aoki, A., Micke, P., Ohshima, M. & Kappert, K., 10月 2021, In: Odontology / the Society of the Nippon Dental University. 109, 4, p. 912-920 9 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Open Access

3 被引用数 (Scopus)

2020

Detection of hepatocyte growth factor in oral rinses using water for possible periodontal diagnosis

Suzuki, S., Aoki, A., Katagiri, S., Maekawa, S., Ejiri, K., Kong, S., Nagata, M., Yamaguchi, Y., Ohshima, M. & Izumi, Y., 7月 2020, In: Journal of Oral Science. 62, 3, p. 250-255 6 p., josnusd.18-0226.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Open Access

4 被引用数 (Scopus)

2018

TBX4 is involved in the super-enhancer-driven transcriptional programs underlying features specific to lung fibroblasts

Horie, M., Miyashita, N., Mikami, Y., Noguchi, S., Yamauchi, Y., Suzukawa, M., Fukami, T., Ohta, K., Asano, Y., Sato, S., Yamaguchi, Y., Ohshima, M., Suzuki, H. I., Saito, A. & Nagase, T., 1月 2018, In: American Journal of Physiology - Lung Cellular and Molecular Physiology. 314, 1, p. L177-L191

研究成果: ジャーナルへの寄稿 › 記事 › 査読

37 被引用数 (Scopus)

2017

An integrated expression atlas of miRNAs and their promoters in human and mouse

De Rie, D., Abugessaisa, I., Alam, T., Arner, E., Arner, P., Ashoor, H., Åström, G., Babina, M., Bertin, N., Burroughs, A. M., Carlisle, A. J., Daub, C. O., Detmar, M., Deviatiiarov, R., Fort, A., Gebhard, C., Goldowitz, D., Guhl, S., Ha, T. J. & Harshbarger, J. & 50 others, Hasegawa, A., Hashimoto, K., Herlyn, M., Heutink, P., Hitchens, K. J., Hon, C. C., Huang, E., Ishizu, Y., Kai, C., Kasukawa, T., Klinken, P., Lassmann, T., Lecellier, C. H., Lee, W., Lizio, M., Makeev, V., Mathelier, A., Medvedeva, Y. A., Mejhert, N., Mungall, C. J., Noma, S., Ohshima, M., Okada-Hatakeyama, M., Persson, H., Rizzu, P., Roudnicky, F., Sætrom, P., Sato, H., Severin, J., Shin, J. W., Swoboda, R. K., Tarui, H., Toyoda, H., Vitting-Seerup, K., Winteringham, L., Yamaguchi, Y., Yasuzawa, K., Yoneda, M., Yumoto, N., Zabierowski, S., Zhang, P. G., Wells, C. A., Summers, K. M., Kawaji, H., Sandelin, A., Rehli, M., Hayashizaki, Y., Carninci, P., Forrest, A. R. R. & De Hoon, M. J. L., 1 9月 2017, In: Nature Biotechnology. 35, 9, p. 872-878 7 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Open Access

404 被引用数 (Scopus)

CAY10591, a SIRT1 activator, suppresses cell growth, invasion, and migration in gingival epithelial carcinoma cells

Murofushi, T., Tsuda, H., Mikami, Y., Yamaguchi, Y. & Suzuki, N., 2017, In: Journal of Oral Science. 59, 3, p. 415-423 9 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Open Access

9 被引用数 (Scopus)

FANTOM5 CAGE profiles of human and mouse samples

Noguchi, S., Arakawa, T., Fukuda, S., Furuno, M., Hasegawa, A., Hori, F., Ishikawa-Kato, S., Kaida, K., Kaiho, A., Kanamori-Katayama, M., Kawashima, T., Kojima, M., Kubosaki, A., Manabe, R. I., Murata, M., Nagao-Sato, S., Nakazato, K., Ninomiya, N., Nishiyori-Sueki, H. & Noma, S. & 158 others, Saijyo, E., Saka, A., Sakai, M., Simon, C., Suzuki, N., Tagami, M., Watanabe, S., Yoshida, S., Arner, P., Axton, R. A., Babina, M., Kenneth Baillie, J., Barnett, T. C., Beckhouse, A. G., Blumenthal, A., Bodega, B., Bonetti, A., Briggs, J., Brombacher, F., Carlisle, A. J., Clevers, H. C., Davis, C. A., Detmar, M., Dohi, T., Edge, B. A. S., Edinger, M., Ehrlund, A., Ekwall, K., Endoh, M., Enomoto, H., Eslami, A., Fagiolini, M., Fairbairn, L., Farach-Carson, M. C., Faulkner, G. J., Ferrai, C., Fisher, M. E., Forrester, L. M., Fujita, R., Furusawa, J. I., Geijtenbeek, T. B., Gingeras, T., Goldowitz, D., Guhl, S., Guler, R., Gustincich, S., Ha, T. J., Hamaguchi, M., Hara, M., Hasegawa, Y., Herlyn, M., Heutink, P., Hitchens, K. J., Hume, D. A., Ikawa, T., Ishizu, Y., Kai, C., Kawamoto, H., Kawamura, Y. I., Kempfle, J. S., Kenna, T. J., Kere, J., Khachigian, L. M., Kitamura, T., Klein, S., Peter Klinken, S., Knox, A. J., Kojima, S., Koseki, H., Koyasu, S., Lee, W., Lennartsson, A., MacKay-Sim, A., Mejhert, N., Mizuno, Y., Morikawa, H., Morimoto, M., Moro, K., Morris, K. J., Motohashi, H., Mummery, C. L., Nakachi, Y., Nakahara, F., Nakamura, T., Nakamura, Y., Nozaki, T., Ogishima, S., Ohkura, N., Ohno, H., Ohshima, M., Okada-Hatakeyama, M., Okazaki, Y., Orlando, V., Ovchinnikov, D. A., Passier, R., Patrikakis, M., Pombo, A., Pradhan-Bhatt, S., Qin, X. Y., Rehli, M., Rizzu, P., Roy, S., Sajantila, A., Sakaguchi, S., Sato, H., Satoh, H., Savvi, S., Saxena, A., Schmidl, C., Schneider, C., Schulze-Tanzil, G. G., Schwegmann, A., Sheng, G., Shin, J. W., Sugiyama, D., Sugiyama, T., Summers, K. M., Takahashi, N., Takai, J., Tanaka, H., Tatsukawa, H., Tomoiu, A., Toyoda, H., Wetering, M., Berg, L. M. V. D., Verardo, R., Vijayan, D., Wells, C. A., Winteringham, L. N., Wolvetang, E., Yamaguchi, Y., Yamamoto, M., Yanagi-Mizuochi, C., Yoneda, M., Yonekura, Y., Zhang, P. G., Zucchelli, S., Abugessaisa, I., Arner, E., Harshbarger, J., Kondo, A., Lassmann, T., Lizio, M., Sahin, S., Sengstag, T., Severin, J., Shimoji, H., Suzuki, M., Suzuki, H., Kawai, J., Kondo, N., Itoh, M., Daub, C. O., Kasukawa, T., Kawaji, H., Carninci, P., Forrest, A. R. R. & Hayashizaki, Y., 29 8月 2017, In: Scientific data. 4, 170112.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Open Access

163 被引用数 (Scopus)

Integrative CAGE and DNA methylation profiling identify epigenetically regulated genes in NSCLC

Horie, M., Kaczkowski, B., Ohshima, M., Matsuzaki, H., Noguchi, S., Mikami, Y., Lizio, M., Itoh, M., Kawaji, H., Lassmann, T., Carninci, P., Hayashizaki, Y., Forrest, A. R. R., Takai, D., Yamaguchi, Y., Micke, P., Saito, A. & Nagase, T., 1 10月 2017, In: Molecular Cancer Research. 15, 10, p. 1354-1365 12 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Open Access

25 被引用数 (Scopus)

MicroRNA profiling in gingival crevicular fluid of periodontitis—a pilot study

Saito, A., Horie, M., Ejiri, K., Aoki, A., Katagiri, S., Maekawa, S., Suzuki, S., Kong, S., Yamauchi, T., Yamaguchi, Y., Izumi, Y. & Ohshima, M., 1 7月 2017, In: FEBS Open Bio. 7, 7, p. 981-994 14 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Open Access

50 被引用数 (Scopus)

2016

Fibroblast VEGF-receptor 1 expression as molecular target in periodontitis

Ohshima, M., Yamaguchi, Y., Ambe, K., Horie, M., Saito, A., Nagase, T., Nakashima, K., Ohki, H., Kawai, T., Abiko, Y., Micke, P. & Kappert, K., 1 2月 2016, In: Journal of Clinical Periodontology. 43, 2, p. 128-137 10 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

16 被引用数 (Scopus)

Transcriptome analysis of periodontitis-associated fibroblasts by CAGE sequencing identified DLX5 and RUNX2 long variant as novel regulators involved in periodontitis

Horie, M., Yamaguchi, Y., Saito, A., Nagase, T., Lizio, M., Itoh, M., Kawaji, H., Lassmann, T., Carninci, P., Forrest, A. R. R., Hayashizaki, Y., Suzutani, T., Kappert, K., Micke, P. & Ohshima, M., 20 9月 2016, In: Scientific Reports. 6, 33666.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Open Access

18 被引用数 (Scopus)

2015

The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome

FANTOM consortium, 18 12月 2015, In: PLoS Biology. 13, 12, e1002315.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Open Access

19 被引用数 (Scopus)

Three-dimensional co-culture model for tumor-stromal interaction

Horie, M., Saito, A., Yamaguchi, Y., Ohshima, M. & Nagase, T., 2 2月 2015, In: Journal of Visualized Experiments. 96, e52469.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Open Access

13 被引用数 (Scopus)

Ultrastructural immunolocalization of laminin 332 (laminin 5) at dento-gingival interface in Macaca fuscata monkey

Sawada, T., Yamazaki, T., Shibayama, K., Yamaguchi, Y. & Ohshima, M., 1 6月 2015, In: Medical Molecular Morphology. 48, 2, p. 104-111 8 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

5 被引用数 (Scopus)

2014

A promoter-level mammalian expression atlas

Forrest, A. R. R., Kawaji, H., Rehli, M., Baillie, J. K., De Hoon, M. J. L., Haberle, V., Lassmann, T., Kulakovskiy, I. V., Lizio, M., Itoh, M., Andersson, R., Mungall, C. J., Meehan, T. F., Schmeier, S., Bertin, N., Jørgensen, M., Dimont, E., Arner, E., Schmidl, C. & Schaefer, U. & 241 others, Medvedeva, Y. A., Plessy, C., Vitezic, M., Severin, J., Semple, C. A., Ishizu, Y., Young, R. S., Francescatto, M., Altschuler, I. A., Albanese, D., Altschule, G. M., Arakawa, T., Archer, J. A. C., Arner, P., Babina, M., Rennie, S., Balwierz, P. J., Beckhouse, A. G., Pradhan-Bhatt, S., Blake, J. A., Blumenthal, A., Bodega, B., Bonetti, A., Briggs, J., Brombacher, F., Burroughs, A. M., Califano, A., Cannistraci, C. V., Carbajo, D., Chen, Y., Chierici, M., Ciani, Y., Clevers, H. C., Dalla, E., Davis, C. A., Detmar, M., Diehl, A. D., Dohi, T., Drabløs, F., Edge, A. S. B., Edinger, M., Ekwall, K., Endoh, M., Enomoto, H., Fagiolini, M., Fairbairn, L., Fang, H., Farach-Carson, M. C., Faulkner, G. J., Favorov, A. V., Fisher, M. E., Frith, M. C., Fujita, R., Fukuda, S., Furlanello, C., Furuno, M., Furusawa, J. I., Geijtenbeek, T. B., Gibson, A. P., Gingeras, T., Goldowitz, D., Gough, J., Guhl, S., Guler, R., Gustincich, S., Ha, T. J., Hamaguchi, M., Hara, M., Harbers, M., Harshbarger, J., Hasegawa, A., Hasegawa, Y., Hashimoto, T., Herlyn, M., Hitchens, K. J., Sui, S. J. H., Hofmann, O. M., Hoof, I., Hori, F., Huminiecki, L., Iida, K., Ikawa, T., Jankovic, B. R., Jia, H., Joshi, A., Jurman, G., Kaczkowski, B., Kai, C., Kaida, K., Kaiho, A., Kajiyama, K., Kanamori-Katayama, M., Kasianov, A. S., Kasukawa, T., Katayama, S., Kato, S., Kawaguchi, S., Kawamoto, H., Kawamura, Y. I., Kawashima, T., Kempfle, J. S., Kenna, T. J., Kere, J., Khachigian, L. M., Kitamura, T., Klinken, S. P., Knox, A. J., Kojima, M., Kojima, S., Kondo, N., Koseki, H., Koyasu, S., Krampitz, S., Kubosaki, A., Kwon, A. T., Laros, J. F. J., Lee, W., Lennartsson, A., Li, K., Lilje, B., Lipovich, L., Mackay-sim, A., Manabe, R. I., Mar, J. C., Marchand, B., Mathelier, A., Mejhert, N., Meynert, A., Mizuno, Y., De Morais, D. A. L., Morikawa, H., Morimoto, M., Moro, K., Motakis, E., Motohashi, H., Mummery, C. L., Murata, M., Nagao-Sato, S., Nakachi, Y., Nakahara, F., Nakamura, T., Nakamura, Y., Nakazato, K., Van Nimwegen, E., Ninomiya, N., Nishiyori, H., Noma, S., Nozaki, T., Ogishima, S., Ohkura, N., Ohmiya, H., Ohno, H., Ohshima, M., Okada-Hatakeyama, M., Okazaki, Y., Orlando, V., Ovchinnikov, D. A., Pain, A., Passier, R., Patrikakis, M., Persson, H., Piazza, S., Prendergast, J. G. D., Rackham, O. J. L., Ramilowski, J. A., Rashid, M., Ravasi, T., Rizzu, P., Roncador, M., Roy, S., Rye, M. B., Saijyo, E., Sajantila, A., Saka, A., Sakaguchi, S., Sakai, M., Sato, H., Satoh, H., Savvi, S., Saxena, A., Schneider, C., Schultes, E. A., Schulze-Tanzil, G. G., Schwegmann, A., Sengstag, T., Sheng, G., Shimoji, H., Shimoni, Y., Shin, J. W., Simon, C., Sugiyama, D., Sugiyama, T., Suzuki, M., Suzuki, N., Swoboda, R. K., 'T Hoen, P. A. C., Tagami, M., Tagami, N. T., Takai, J., Tanaka, H., Tatsukawa, H., Tatum, Z., Thompson, M., Toyoda, H., Toyoda, T., Valen, E., Van De Wetering, M., Van Den Berg, L. M., Verardo, R., Vijayan, D., Vorontsov, I. E., Wasserman, W. W., Watanabe, S., Wells, C. A., Winteringham, L. N., Wolvetang, E., Wood, E. J., Yamaguchi, Y., Yamamoto, M., Yoneda, M., Yonekura, Y., Yoshida, S., Zabierowski, S. E., Zhang, P. G., Zhao, X., Zucchelli, S., Summers, K. M., Suzuki, H., Daub, C. O., Kawai, J., Heutink, P., Hide, W., Freeman, T. C., Lenhard, B., Bajic, L. V. B., Taylor, M. S., Makeev, V. J., Sandelin, A., Hume, D. A., Carninci, P. & Hayashizaki, Y., 1 1月 2014, In: Nature. 507, 7493, p. 462-470 9 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Open Access

1406 被引用数 (Scopus)

Differential knockdown of TGF-β ligands in a three-dimensional co-culture tumor- stromal interaction model of lung cancer

Horie, M., Saito, A., Noguchi, S., Yamaguchi, Y., Ohshima, M., Morishita, Y., Suzuki, H. I., Kohyama, T. & Nagase, T., 9 8月 2014, In: BMC Cancer. 14, 1, 580.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Open Access

22 被引用数 (Scopus)

Expression and localization of laminin 5, laminin 10, type IV collagen, and amelotin in adult murine gingiva

Sawada, T., Yamazaki, T., Shibayama, K., Kumazawa, K., Yamaguchi, Y. & Ohshima, M., 6月 2014, In: Journal of Molecular Histology. 45, 3, p. 293-302 10 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

16 被引用数 (Scopus)

High-frequency low-level diode laser irradiation promotes proliferation and migration of primary cultured human gingival epithelial cells

Ejiri, K., Aoki, A., Yamaguchi, Y., Ohshima, M. & Izumi, Y., 7月 2014, In: Lasers in Medical Science. 29, 4, p. 1339-1347 9 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

37 被引用数 (Scopus)

2013

Nicotine-induced expression of low-density lipoprotein receptor in oral epithelial cells

Ito, S., Gojoubori, T., Tsunoda, K., Yamaguchi, Y., Asano, M., Goke, E., Koshi, R., Sugano, N., Yoshinuma, N., Komiyama, K. & Ito, K., 16 12月 2013, In: PLoS ONE. 8, 12, e82563.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Open Access

8 被引用数 (Scopus)

2010

Insulin-like growth factor-binding protein-2 and -3 in gingival crevicular fluid

Takenouchi, Y., Ohshima, M., Yamaguchi, Y., Nishida, T., Senda, N., Idesawa, M., Otsuka, K. & Ito, K., 12月 2010, In: Journal of Periodontal Research. 45, 6, p. 803-808 6 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

8 被引用数 (Scopus)

TGF-β signaling in gingival fibroblast-epithelial interaction

Ohshima, M., Yamaguchi, Y., Matsumoto, N., Micke, P., Takenouchi, Y., Nishida, T., Kato, M., Komiyama, K., Abiko, Y., Ito, K., Otsuka, K. & Kappert, K., 11月 2010, In: Journal of Dental Research. 89, 11, p. 1315-1321 7 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

28 被引用数 (Scopus)

2009

bFGF rescues imatinib/STI571-induced apoptosis of sis-NIH3T3 fibroblasts

Ohshima, M., Yamaguchi, Y., Kappert, K., Micke, P. & Otsuka, K., 3 4月 2009, In: Biochemical and Biophysical Research Communications. 381, 2, p. 165-170 6 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

8 被引用数 (Scopus)

Comparison of periodontal health status and oral health behavior between Japanese and Chinese dental students.

Ohshima, M., Zhu, L., Yamaguchi, Y., Kikuchi, M., Nakajima, I., Langham, C. S., Lin, W., Otsuka, K. & Komiyama, K., 6月 2009, In: Journal of Oral Science. 51, 2, p. 275-281 7 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Open Access

19 被引用数 (Scopus)

2008

In vitro characterization of the cytokine profile of the epithelial cell rests of malassez

Ohshima, M., Yamaguchi, Y., Mickey, P., Abiko, Y. & Otsuka, K., 5月 2008, In: Journal of Periodontology. 79, 5, p. 912-919 8 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

29 被引用数 (Scopus)

Profiling of Radicular Cyst and Odontogenic Keratocyst Cytokine Production Suggests Common Growth Mechanisms

Hayashi, M., Ohshima, T., Ohshima, M., Yamaguchi, Y., Miyata, H., Takeichi, O., Ogiso, B., Ito, K., Östman, A. & Otsuka, K., 1月 2008, In: Journal of Endodontics. 34, 1, p. 14-21 8 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

11 被引用数 (Scopus)

2006

Cytokine profile in synovial fluid from patients with internal derangement of the temporomandibular joint: A preliminary study

Matsumoto, K., Honda, K., Ohshima, M., Yamaguchi, Y., Nakajima, I., Micke, P. & Otsuka, K., 11月 2006, In: Dentomaxillofacial Radiology. 35, 6, p. 432-441 10 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

42 被引用数 (Scopus)

Laminin expression by human periodontal ligament fibroblasts

Ohshima, M., Yamaguchi, Y., Otsuka, K., Sato, M. & Ishikawa, M., 5月 2006, In: Connective Tissue Research. 47, 3, p. 149-156 8 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

11 被引用数 (Scopus)

Mitogen-activated protein kinase/extracellular signal-regulated protein kinase activation of cultured human dental pulp cells by low-power gallium-aluminium-arsenic laser irradiation

Miyata, H., Genma, T., Ohshima, M., Yamaguchi, Y., Hayashi, M., Takeichi, O., Ogiso, B. & Otsuka, K., 3月 2006, In: International Endodontic Journal. 39, 3, p. 238-244 7 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

30 被引用数 (Scopus)

2002

Cellular response in normal human cells exposed to chronically low-dose radiation in heavy-ion radiation field

Suzuki, M., Yasuda, H., Lee, R., Ohira, C., Majima, H., Yamaguchi, Y., Yamaguchi, C. & Fujitaka, K., 1 7月 2002, In: International Congress Series. 1236, C, p. 323-326 4 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

Effect of enamel matrix derivative on the differentiation of C2C12 cells

Ohyama, M., Suzuki, N., Yamaguchi, Y., Maeno, M., Otsuka, K. & Ito, K., 2002, In: Journal of Periodontology. 73, 5, p. 543-550 8 p.

研究成果: ジャーナルへの寄稿 › 記事 › 査読

62 被引用数 (Scopus)

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